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Model calibration was assessed with the Hosmer-Lemeshow goodness-of-fit χ statistic, a measure of discrepancy describing how well the predicted probabilities fit observed outcomes.
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Thus, the potential discrepancy described by Mr. True could in fact be enough to reverse the result.
Only 4(6%) of the 64 reviews with an outcome discrepancy described the reason for the change in the review, with no acknowledgment of the change in any of the eight reviews containing potentially biased discrepancies.
This suggests that S6K phosphorylation might be sometimes independent of mTOR activation, which may also contribute to the discrepancy described above.
Although the discrepancy described above cannot be clearly explained, it would be speculated that overexpression of IL-6 by LNCaP cells itself rather than exogenous administration of IL-6 may render them undifferentiated, resulting in a lesser amount of PSA production than that in LNCaP/Co cells.
Acknowledging that Cys substitutions in the designed structures discussed earlier led to increased binding affinities, we find it is worth noting that the apparent discrepancy described here is likely the result of interrupting the binding site structure of a highly evolved protein.
I have seen firsthand the state-by-state discrepancies described, from my early days as a public defender in Washington — a model system — to my work across the South trying to rebuild crumbling public defender offices.
Apart from the discrepancies described above, most of the calculated corrections along the survey track lines closely followed the variations at CWE.
Besides the discrepancies described for this methodology depending on the species, this difference could also be due to the fact that both have a larger amplicon, compared to the other 3 species, and that their targets are single-copy sequences (Table 1).
These discrepancies, described also by Claesson et al. [57], could be due to the distinct databases used, the differences between the Bergey (RDP and NCBI MEGANAN) taxonomies and differences between the BLAST plus LCA MEGANN) and Bayesian (RDP) algorithms.
However, the biological explanation for the discrepancies described above (in cases 1 and 3) requires feedback assessment between modeling and experiments.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com