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The recently discovered sequence based CRISPR (clustered regularly interspaced short palindromic repeats) system provides the means to examine virus-host interactions in natural populations using molecular tools.
Their metric, the "ortholog hit ratio," compares the length of the newly discovered sequence that obtains a BLAST hit versus the full length of its top hit [ 20].
The ENGAGE consortium discovered sequence variants associated with smoking behavior within regions harboring nAChR genes (CHRNB3-CHRNA6, 8p11) and a nicotine-metabolizing enzyme (26).
Beer and Tavazoie studied two computationally discovered sequence elements, PAC (polymerase A and C) and RRPE (rRNA processing element), which are considered to have combinatorial regulations on their target genes [ 23].
The discovered gene encompasses an open reading frame, and its length of 363 amino acids is comparable to the 358 amino acid length of the most similar Micromonospora gene in the database, suggesting that the discovered sequence captures an intact gene.> -wrap-foot> thermophiliclicommunityty; M, mesophilic community.
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We intend to select and implement a more recent and efficient algorithm (like in [20]), especially to improve the computing time that is dedicated to the maintenance and updating of the discovered sequences.
Within the Metazoa group, we discovered sequences that align with sequences of organisms affiliated with six phyla (Fig. 5b).
Many proteins, such as synthetic or hypothetical proteins, and newly discovered sequences without being deposited into databanks yet, do not have accession numbers, and hence cannot be treated with the GO approach.
In summary, we identified 59,295 common bean unigenes of which 31,664 unigenes are newly discovered sequences.
A crucial step in deciphering 16S rRNA reads data is the taxonomic annotation of the discovered sequences.
In order to ensure that all gnathostome Dact family members were traced, we repeated the searches, using the newly discovered sequences as queries.
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