Sentence examples for direct alignment to from inspiring English sources

North of Dundee, a more direct alignment to Azalia was added to US 23, turning the former routing back to local control in late 1947 or early 1948; at the same time, the last gravel section of the highway was paved near Hammond Bay in northwestern Presque Isle County.

Finally, a random subset of the contigs, which represented a variety of length and read coverage, were validated by direct alignment to previously published, Sanger sequenced, full-length Eucalyptus genes that were directly cloned from cDNA (Additional File 3).

For inversions, tandem duplications and translocations, a direct alignment to the reference would demand either a change in the orientation (inversions) or a change in the prefix suffix order (tandem duplications) or potentially both changes for translocations (Fig. 2).

The former case is particularly problematic because RNA-seq alignersometimeses prefer direct alignments to spliced alignments, causing spuriously aligned reads to accumulate on processed pseudogenes.

Newbler assembly notation codes putative SNPs with flanking insertion characters (presumably to reflect uncertainty in indel errors), whereas most reference-guided assemblies provide a direct alignment at polymorphic positions that are easily recognized by SNP-finding packages.

A direct alignment of this to a parallel, annotated map of the genome can provide a visually striking and intuitive way to assess the data.

Direct alignment of reads to reference alleles is also supported, but at the present time we find this modality has modest utility due to current limitations on read length.

As a proof of concept, AliView comes with a preset code that adds a button for directing the alignment to FastTree (Price et al., 2010) that calculates a phylogenetic tree that is then automatically opened in FigTree (Rambaut, 2012).

By 1960, PA 83 was realigned to a more direct alignment between Bernville and Schubert, passing through Strausstown.

A jog in the routing near Almena was removed in 1937 when Wisconsin rerouted the highway to a more direct alignment in the area.

To this purpose, TUIUIU was applied as a preprocessing step of a multiple alignment application, leading to an overall execution time (filter plus alignment) on average 63 and at best 530 times smaller than before (direct alignment) and also, in some cases, to a qualitative improvement of the alignment obtained.