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T-Coffee calculates pairwise alignments by combining the direct alignment of the pair with indirect alignments that aligns each sequence of the pair to a third sequence.
The honesty and desire to expand our technological knowledge is in direct alignment of the ieee code of ethics.
The multi-array comparisons that were undertaken involved the complementary approaches of direct alignment of the data sets in the context of each chromosome (Figure 5A and Figure S1), as well as comparison of the data sets using the Genespring Venn Analysis tool (Figure 6).
Direct alignment of the 35 bp Illumina reads resulted in the unique alignment of approximately one-third of the sequences.
Direct alignment of the signal peptides resulted in alignments which only had high quality (similarity level higher than 30%) in the h-regions (TMH).
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Direct alignment of this sequence with that of the related phosphatase PTN4 [Swiss-Prot:PTN4_HUMAN] leaves a gap where the FA region would be (see Additional file 2); furthermore, probing all possible translations of the genomic sequence of PTN3 with the FA region HMM reveals no FA sequence that might be expressed in splice variants.
A direct alignment of this to a parallel, annotated map of the genome can provide a visually striking and intuitive way to assess the data.
The direct alignment of profitability and social rewards ensures the journey is the end reward.
During the merging, the common read guides a direct alignment of different contigs, which takes linear time in the total number of reads involved in the star.
However, this claim hinges on the direct alignment of scientific merit and empirical clout; but this requires an argument, for it is far from obvious: from whence this prescription?
This issue is illustrated as follows: for any three sequences 1, 2 and 3, the pairwise alignment of 1/2 and 2/3 implies an alignment of 1/3 that may be different from the direct alignment of 1/3.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com