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We looked for differential representation of taxa associated with individual cultivars or species.
Fig. 5 Differential representation in the rhizosphere of early-diverged Oryza species.
Differential representation (over or underrepresentation) in rhizosphere of early-diverged Oryza species.
Fig. 4 Differential representation of OTUs between wild Oryza species and domesticated cultivars and landraces.
Differential representation of Taxa in AA genome cultivated vs wild rhizosphere.
Differential representation of taxa in cultivated or wild rhizosphere in AA genome species.
In our differential representation analysis taxa belonging to the Anaerolineae increased in wild vs cultivated rhizosphere.
Selecting patients based on the run-in thereby forces differential representation of certain subpopulations relative to others.
The argument is based on the pseudo differential representation of the Euler group and an application of an abstract isomorphism theorem for operator C∗-algebras.
To test for differential representation of microbial taxa in different samples and sample groupings the Deseq2 package (Love et al. 2014) was used in conjunction with Phyloseq (McMurdie and Holmes 2013).
In order to examine what types of bacteria were differentially present, accounting for the difference between cultivated and wild varieties, we looked at differential representation between the cultivated and wild species.
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