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2 differential gene expression comparison analyses were performed.
To identify novel genes implicated in organizer and endoderm formation, we performed a differential gene expression comparison of wild-type and Foxa2 null embryos at E7.5.
sphaeroides and E. coli used for differential gene expression comparison were taken directly from published results and presented in congruent style [ 6, 18].
A differential gene expression comparison (RPKMs) between tdp-1 ok803 tdp-1 ok803d wild-type revealed over 1,700 transcripts aberrantly represented with close to an equal numutants trandcripts underrepresented as overrepresented (Fig 1A; Supplementary Table S1).
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Nookaew, I. et al. A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae.
Using microarrays by co-hybridizing two samples labeled with different dyes enables differential gene expression measurements and comparisons across slides while controlling for within-slide variability.
For differential gene expression analysis, pairwise comparisons of datasets from plants inoculated with AcH 505 versus non-inoculated plants [differentially expressed contigs (DECs) in AcH 505 inoculated plants] and plants inoculated with AcH 505 and P. croceum versus non-inoculated plants [DECs in co-inoculated plants] were performed for roots and leaves at RF and SF respectively.
Figure 5 displays the balance of differential gene expression, i.e. the comparison between the number of over- and under-expressed genes, for the real dataset.
On the contrary, most GSA approaches will require major modifications of their methods and software to be applied in a case other than differential gene expression in a class comparison experiment.
If species i is a gene (transcript), then Yimod can be compared with experimental differential gene expression data, and such comparison allow us to evaluate the predictive capability of the model.
In V4 soybeans, a terpene synthase and mediator complex subunit 28 was upregulated by 5.8 and 3.5-fold in the thiamethoxam-treated plants.> -wrap-foot> Differential gene expression in the VC comparison was not detected.
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