Sentence examples for differential expression tests from inspiring English sources

Differential expression: Differential expression tests were performed using the Reproducible Optimized Test Statistic (ROTS 82 with FDR < 0.05.

To reduce the number of differential expression tests downstream, thereby increasing overall power, 50% of the lowest normalized Log2 probe-set intensities were removed according to recommendations by Hackstadt and Hess (2009) [49].

Differential expression tests were performed using the R package DESeq [ 11].

Obtained counts were analyzed using DESeq2 package, that included library size normalization, dispersions estimation, differential expression tests etc. [ 59].

Cuffdiff then performed the differential expression tests at the level of transcripts, primary transcripts and genes [ 44].

Differential expression tests were performed with the Cyber-T implementation of a variant of the t-test [ 32].

That is, the ranking order of betweenness scores was almost completely uncorrelated with the results of differential expression test, and the differentially expressed tests only provide a low accuracy for the prioritization of genes.

We also compared naiveLu, a simple method for identifying differentially expressed genes by simply applying a differential expression test directly without accounting for sample heterogeneity.

Moreover, normalization for the differential expression test expects equivalent expression levels for several co-expressed genes [ 14].

Gene expression was analyzed using principal component analysis, differential expression testing, and gene co-expression networks, and the results correlated to season, location, and contaminant burden.

Differential Expression Testing For the 40 subjects, we compared cases and controls stratified by race/ethnicity.