Sentence examples for differential expression assessments from inspiring English sources

Fisher's method [ 36] is used to define a function as the combination of statistical significance of an interaction by a scoring scheme in the following formula: where diff(x) and diff y) are differential expression assessments of gene x and gene y, respectively.

For differential expression assessment, we used EdgeR on the TCs having >4TPM and used an FDR threshold of <0.05, comparing TNF-α stimulation and control replicates.

Preprocessing, normalization, and differential gene expression assessment were all done in the limma [ 19] (2.14.5) package from the R (2.7.1) software environment [ 39].

For example, most of the popular differential gene expression methods that are used for variable selection provide single gene-based assessments of differential expression [ 22- 25].

Figure 1: Assessment of differential expression analysis.

For assessment of differential expression, the empirical Bayes method was applied [ 26].

For assessment of differential expression we used paired Welch t-test with FDR correction [ 23].

Digital Northern data can be used to provide quantitative assessment of differential expression within a certain limit [ 17].

The assessment of differential expression of genes resulted in a mean log2 expression ratio (treated/untreated) and a p-value for each probe on the array.

An assessment of differential expression levels was attempted for 4 genes using custom mRNA Taqman expression assays (Applied Biosystems): ALDH1A3 (Hs00167476_m1), ITGBL1 (Hs00191224_m1), NFE2L3 (Hs00852569_g1) and SEMA4B (HSEMA4B240_m1).

Our study provides a more global assessment of differential expression between these large brain structures thereby ignoring the regional substructures within each of the brain regions.