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One possible explanation for the differences in significance for a QTL near e could indicate that two different types of loci are detected depending on the group that is used as a basis for comparison.
One microorganism that may constitute a good model for evaluating the bias associated with the calculation of recombination and mutation rates through the analysis of different types of loci is the obligate intracellular human pathogen Chlamydia trachomatis due to its singular genomic features.
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These findings are in keeping with the fact that the methods are robust to different types of susceptibility loci and, therefore, expected to be largely non-redundant.
Four different types of CRISPR loci were previously identified in M. canettii (5 ) and called III-A, I-C, I-Cvar, and I-E (Table 2; Technical Appendix 2 Table 1).
Up to now, different types of bacteriocin locus such as Plantaricin, Pediocin PA-1/AcH, Sakacin674, SakacinP and BavaricinA have been identified from different strains of L. plantarum (C11, WCFS1, NC8, J23 and J51), L. plantarum WHE 92, L. sake 674, L. sake LTH673 and L. bavaricus MI401, respectively (Remiger et al. 1996; Xie et al. 2011).
To quantify the consistency of locus order between the two different types of maps, unique loci of each of the seven datasets were alternatively arranged according to the consensus or the component map to compute two alternative sets of locus positions per dataset.
This positional classification allows researchers to study the correlation, if any, between the expression of different types of non-coding loci and protein-coding genes.
Moreover, traditional enrichment-based approaches for isolating microsatellite loci require a priori choices about what types of microsatellite loci to target (both repeat size, and repeat motif sequence) which will ultimately lead to limited success in obtaining sufficient numbers of different types of useful microsatellite loci [ 26].
This trend was observed in the distribution of scores according to the different types of maltreatment: the locus was external with higher scores in the victims of "neglect" (M = 22.3), followed by the victims of physical abuse (M = 21.68) and then the victims of sexual abuse (M = 21.42).
The loci of limit points, double limit points, and hysteresis points are constructed and used to divide the investigated parametric space into regions of different number solutions or different type of solution loci.
The TRF-loose method yielded in general the same trend for the different types of repeats, with AT-rich loci representing more than 50% of the total number of loci found for each repeat unit size.
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