Different patterns of sequence diversity, haplotype diversity and LD were observed for the candidate genes BLZ1, BLZ2, BPBF, and HvGAMYB.
As has been discussed by many, subfamilies within a family recruited to perform different functions divergently evolve with different patterns of sequence evolution.
Illumina and 454/Roche have different patterns of sequencing errors.
The PWM model is simple, easy to understand, and widely used for representing different patterns of sequences, however it is overly-simplified as it assumes independency (or no correlation) among all positions.
Further evaluation of other normal tissues from patient GA may provide evidence to establish whether the association between recombination in this case was tissue-specific or due to an overall different pattern of sequence evolution within the patient.
As for the E1-E2 region, these estimates indicate that there are very different patterns of differentiation between sequences sampled at different times from the same patient, with a wider range of variation for patients infected with HCV subtype 1b than for those infected with subtype 1a (see below and supplementary Figures S1 and S2).
This is an indication that there are very different patterns of differentiation between sequences sampled at different times from the same patient, with a slightly larger effect for patients infected with HCV subtype 1b than subtype 1a (see below and supplementary Figures S1 and S2).
Finally, the robust phylogenetic footprints established based on this strategy revealed different patterns of finer-scale regulatory sequence signatures allowing a different layer of contrast between species and perhaps a new perspective that may be useful in understanding the contribution of promoter restructuring to the diversity of stress network complexities in flowering plants.
This study suggests that obligate fungal endosymbionts in insects undergo a different pattern of DNA sequence evolution than obligate bacterial endosymbionts when establishing a symbiotic relationship.
We found that the four sets of sequences fell consistently into two groups based on BLAST scores, distinctive patterns of conserved covariant amino acid residues [4] and, in the case of NifD, different patterns of invariant residues in the sequences flanking the Cys-α275 and His-α442 (Azobacter vinelandii sequence numbering) residues that attach the FeMo cofactor to NifD [5].
Both DNA and the histone proteins can be chemically modified, and alleles with the same DNA sequence but different patterns of chemical modifications (called 'epialleles') can be passed between generations and contribute to complex traits or characteristics (Cortijo et al., 2014).
