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The Gene Ontology (GO) terms and KEGG annotations of genes included in the different lists were analyzed by using DAVID tools.
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The resulting peak lists were analyzed with two different methods: the database related protein identification program X!Tandem and the de novo sequencing program Lutefisk.
The gene lists were analyzed and clustered in different pathways or functional categories sorted by a p-value<0.05, according to their biological function using the Database for Annotation, Visualization and Integrated Discovery 2.0 (DAVID 2.0) tool [17].
One hundred ingredient lists were analyzed to find this out.
Identified gene lists were analyzed using IPA.
Gene lists were analyzed using Ingenuity Pathway Analysis QIAGENN).
Promoters from the input gene list were analyzed for enriched presence of 615 different known transcription factor binding sites (as defined in the TRANSFAC version 7.4 database).
This new list was analyzed with GOstat.
The generated list was analyzed using Ingenuity Pathway Analysis.
Each topic list was analyzed independently.
After that, the resulting eight different lists were combined into six different list combinations.
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