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A good system has distinct identifiers for each of these roles, and in fact, sophisticated ones could/should allow multiple different identifiers of the same functional class, for the same user, such as allowing an individual to have multiple characters on WoW, Iain Henderson calls this aspect of identity "personnas".
In general, a text file with columns is used to store either the relationship between objects or the link between different identifiers of the same object.
The synonyms are used to represent links between different identifiers of the same object, such as to link a GI number to an mRNA sequence (for a detailed description of each collector program, see the manual at: http://code.cycadsys.org).org
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Most papers then interrogated the impact of the different identifiers on estimation of Indigenous health indicators.
A PubMed search identified eligible studies that used Australian linked data to interrogate Indigenous identification using more than one identifier and interrogated the impact of the different identifiers on estimation of Indigenous health indicators.
Information in these databases is often hard to resolve with certainty because of subsetting different data in a variety of formats; use of different bioactivity metrics; use of different identifiers for chemicals and proteins; and having to access different query interfaces, respectively.
Of particular concern is assignment of different identifiers for identical resources as well as for conceptually identical resources.
The use of different identifiers for information about the same isolate or illness reported to various CDC surveillance systems (e.g., FoodNet, PulseNet, NARMS) is an obstacle to fully understanding the features of reported infections.
Data merging is a complex task due to, for example, the use of different identifiers, the absence of a 'one gene-one protein' relationship, alternative splicing, and measurement of multiple signals for one gene.
How did they handle the problem of different identifier to name genes (e.g. Entrez GeneID, Ensembl)?
If one identifier for a given compound does not map to any identifier of the requested output type, a different identifier for the same compound may be used to fill that gap.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com