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A variation of this procedure is the substitution of different gene expression change measures such as fold changes, logratios, or p-values, so, for example, both z ratios and the log of fold changes were independently tested in GSMA for both Affymetrix and Illumina measurements [see Additional File 4].
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As expected, the presence of D-galacturonate elicited different gene expression changes than D-glucuronate.
Unfortunately, all the patients had different gene expression changes after chemotherapy, with no single gene expression changes significantly associated with response in all five patients.
By contrast, it is also possible that treatment with two structurally similar chemical compounds with slightly different bioavailability may result in vastly different gene expression changes.
First, the two wheat genotypes with contrasting heat stress responses displayed different gene expression changes in short and prolonged heat treatments.
Comparison of the identity of RA-regulated genes in these studies with those reported here reveal some commonality of genes such as RAR-β2, PKCα and insulin-like growth factor binding protein 6, but also a number of different gene expression changes.
These results indicate that systemic and local defense responses of A. thaliana to leafminers involve similar mechanisms, but with different gene expression fold change ranges.
Recently, different gene expression or proteome changes of orchid protocorms in response to mycorrhizal fungi were studied and mutualistic plant-fungus relationship was suggested [ 19– 219.
The results revealed 123 probes (97 genes) with significantly different early gene expression changes (T2 − T1) between the two RCB groups (Additional file 5).
To understand the bacterial global response to QDs of different size, gene expression changes in E. coli were determined by microarray analysis after 15 min exposure to 50 μg/mL red or green QDs.
Indeed, a misexpression of HOX genes could result in a different gene expression profile, leading to changes in cell differentiation or the adoption of an alternative cell identity (i.e., homeotic transformation).
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