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Each of the above approaches has different strength and weaknesses in classifying different functional terms.
Thus, MIPS gives a very rough division into a couple of dozens of categories and several hundreds of subcategories, whereas GO includes 29,983 different functional terms (as of March 2010).
Based on the GO classification, the unique orthologs were clustered into different functional terms and the mean Ka/Ks ratio for each term was also calculated.
Based on the GO classifications, the unique orthologs were clustered into different functional terms and the Ka, Ks and Ka/Ks ratios for each term was calculated.
The GOrilla functional enrichment test produces a list of significant individual gene ontology (GO) terms, whereas DAVID performs enrichment tests using a number of different functional terms, including GO terms, SwissProt keywords, and UniProt sequence features.
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The colors correspond to different GO functional terms.
Our results presented here put forth an overall detailed analysis of the action of TNFα in HepG2 cells by encompassing the altered gene expression profile, the different GO functional terms these altered genes categorise in and the consequent predicted signatures of conserved transcription factor binding sites in these sets of genes.
Here, we assessed the effect of farming system, landscape characteristics and habitat structure on biodiversity in Mediterranean vineyards using two taxa with different functional traits (in terms of mobility, dispersal ability and home range size): bats and arachnids.
Then, we compared the peaks of different functional groups in terms of relative percentage of each functional C group.
This characteristic seems to be shared with non-human primates since different sub-regions of the primary auditory cortex of macaques present different functional characteristics in term of tonotopy, latency and frequency tuning [48], [49].
To determine functional associations of the different metaclusters, we analyzed functional terms extracted from GREAT for each metacluster.
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CEO of Professional Science Editing for Scientists @ prosciediting.com