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Cyclin domain is a helical domain for protein recognition, which exists mostly in cyclin superfamily proteins but also in transcription factor II B and Retinoblastoma with different copies and forms of distribution (Gibson et al., 1994).
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There are multiple variations of this particular sequence in different copies of LINE1 repeats forming different groups of repeated FRT-like sequences originated at position 1990 of ORF2 (Figure 7).
Agt1 copies from this species form three different clades within clade VII: in two clades the different copies of Pe28 and Pe32 cluster together, whereas Pe31 and Pe33 lack duplicates.
However, TE copies diverge as they multiply and different copies may accumulate different modifications.
Take p copies of this graph λ1Ka, and join each pair of vertices in different copies with λ2 edges.
For example, we found one copy loss and different copy gain (three to six copies) in CNVR22, and one and two copies loss in CNVR373.
Different secondary structure prediction programs vary in the confidence with which they predict the central region (residues 15 60) of different repeat copies to form 1, 2, or 3 helices, but for all copies this region can be represented as a single helix with a hydrophobic side and negatively charged polar side.
Tandem repetitive sequences are known to have high mutation rates to form different copy numbers in cell division.
The functional versatility of the ZnF-containing proteins arises from the modular structure of ZnFs, which can be found in multiple copies and in different forms.
Even though partners of fusion sequences formed due to CGRs belong to different copy number segments, they have highly correlated copy number value, see Figure 4F.
We work with a specific copy pipeline equipped with different copy modes which are all possible combinations of mono/color, text/mix/picture/photo, and periodic/stochastic.
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