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Although these five analyses employed different statistical protocols, analyzed different chemical databases, and identified differing numbers and types of structural alerts, their results were surprisingly similar (Kimber et al., 2007; Seed et al., 2008).
Integration of different chemical databases should consider these problems.
However, different chemical databases may describe entities with different levels of generality.
It consists of more than 20 different chemical databases, such as compound structure database, Chinese traditional medicine, chemical technical information database [4].
Unfortunately, no efficient way to create a canonical molecular representation for this line notation existed, meaning that a given molecule could be referred to by multiple different WLN strings in different chemical databases.
Once the target(s) have been identified, the in silico virtual screening of different chemical databases could provide unprecedented opportunity to select and design the best possible inhibitor(s).
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Fragments occur in these structure databases in different chemical environments, leading to them being observed in different conformations.
In an effort to facilitate the integration of data from different sources, ClassyFire also contains a database of cross-references from other popular chemical databases that use different taxonomies/ontologies, such as KEGG [45], ChEBI [15], LIPID MAPS [13], and MetaCyc [46].
Her research activities include: development of algorithms for mutagenicity and carcinogenicity prediction, organization of chemical databases, validation of different schemas for toxicity data integration, mapping between different toxicological databases, and the development of ontology for toxicological endpoints.
The algorithm comes with tools to interpret several different type of chemical database formats such as CHEMKIN® input and the KEGG database.
Rule 1 is also proving to be useful when considering that different CTs may be found in chemical databases for the same compound – especially if structures are not normalized by the same process before the structural representation is entering the database.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com