Sentence examples for different alignments in the from inspiring English sources

The TCOFFEE program uses a library of alignments in the construction of the final MSA, and its output MSA is colored according to confidence scores that reflect the agreement between different alignments in the library regarding each aligned residue.

The SVM model was trained with different alignments in the positive and negative training sets, which results in an asymmetric model.

As a prelude to generating an EvoPrint, the inter-genome comparative program first displays the results of the different alignments in a tabular form referred to here as the alignment scorecard.

We then attempted to compare the different alignments in terms of mean similarity between Gene Ontology (GO) annotations of matched pairs.

Two types of regions were identified between neighboring blocks: (1) simple indels, where the sequence was cleanly inserted/deleted in one genome relative to the other and (2) 816 cases where sequence was present in both the N2 and Hawaiian genomes but could not be accurately aligned (alignment using various Smith Waterman algorithm implementations revealed different alignments in each case).

The roadway between Packwood and Cayuse Pass, added to the state highway system on a different alignment in 1905, was finally completed in 1940, and the White Pass Highway was dedicated on August 12 , 1951 opening a shortcut between southwest Washington and Yakima.

Damon can envision a different alignment in 2010, possibly with players like Alex Rodriguez, Jorge Posada and Derek Jeter as well as Damon rotating through the D.H. role.

This was concordant with the different subunit alignments in the crystal structures of the EPO receptor ECD complexed to agonist or antagonist cyclic peptides [ 19].

For each site in the different alignments, the evolutionary rate of amino acid substitutions was calculated using MEGA5 (Tamura et al. 2011) based on the PhyML trees.

A notable difference among solved sHSP ACD structures is that dimers appear in different alignments of the two β6+7 strands (Clark et al., 2011; Hochberg et al., 2014).

Different studies investigated consequences of different alignments parameters settings in the outcome of phylogenetic studies [ 59- 62].