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The median differences of normalized PP peaks between the two groups were determined using the Mann-Whitney U test and the false discovery rate.
Figure 6E and F depicts the relative variable fluorescence between Fo and F300 μs (WK) and the differences of normalized N-treated transients minus 6000 μM N-treated transient (ΔWK).
Figure 6C and D shows the kinetics of relative variable fluorescence at any time ( {text{V}}_{text{t}} = ({text{F}}_{text{t}} - {text{F}}_{text{o}} )/({text{F}}_{text{m}} - {text{F}}_{text{o}} ) ) and the differences of normalized N-treated transients minus 6000 μM N-treated transient (ΔVt).
Differences of normalized expression values between alternative genotype groups were estimated by Wilcoxon rank sum test implemented in R software.
The density plot shows the distribution of differences of normalized reads averaged over 3 repeats of each of drh-1 mutants and N2.
Fig. 6C and 6F depicts the relative variable fluorescence between Fo and F300 μs (WK) and the differences of normalized P-treated transients minus 1000 μM P-treated transient (ΔWK).
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We observed that the normalized depth distribution of DOP-1 amplified data in Alu and L1 regions was significantly lower than that at whole-genome level, and DOP-1 amplified data had the greatest difference of normalized depth distribution between the repeat regions and whole genome among different WGA methods (Fig. 3b, Bonferroni-corrected Mann–Whitney-Wilcoxon test, p < 0.001).
We developed a multistep classification approach that uses: supervised masking of non-tree image elements; bi-temporal (pre- and post-mortality) differencing of normalized difference vegetation index (NDVI) and red:green ratio (RGI); and unsupervised multivariate clustering of pixels into live and dead tree classes using a Gaussian mixture model.
The second term, η±, measures the relative difference of normalized read count difference at consecutive positions.
Briefly, our method clusters genes based on the epigenetic profile of gains (positive difference of normalized levels of ChIP-seq enrichment between the mesenchymal and epithelial states) and losses (negative difference) of histone modifications at gene loci during EMT.
Treatment means were parameterized (Table 1) and estimated by fitting a linear mixed model to the difference of normalized signal intensities between the Cy3 and Cy5 channels for each array.
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