Sentence examples for differences between the alignment from inspiring English sources

A dataset of 33 cucumber WRKY genes and 35 assembled WRKY gene cDNAs generated in a previous experimental study [ 30] were aligned to the reassembled cucumber genome by spaln [ 27], followed by manual checking of the differences between the alignment results and gene predictions in annotVer 1.0 and annotVer 2.0.

The difference between the alignment scores is divided by the SD of the randomized alignment score distribution where the scores greater than 6 are indicative of homology between two sequences [39] [41].

The beginning and end of the alignments were evaluated independently, and the difference between the alignment boundaries and the embedded domain boundaries was calculated in number of residues.

To achieve this, we ran a benchmark of all-against-all pairwise alignments of bacterial RNAse P RNA secondary structure trees, using our tool's different tree-alignment modes and comparing the differences between the obtained alignment costs.

Topological differences between the full alignment topology and each of the three other largest data partitions (full alignment without ycf1 and ycf2, and exon nucleotides both with and without ycf1 and ycf2) were tested for significance using the Shimodaira-Hasegawa test [ 56] with resampling estimated log-likelihood (RELL) bootstrapping (1,000 replicates) under the GTR+G model of evolution.

Since the pairwise potential in the Z-score design tends to weaken the conservation caused by function, functionally conserved sites tend to have a large conservation difference between the native alignment and the alignment of designed sequences.

Second, another experiment was executed to observe the differences between the sequence alignments with different version of BLASTP.

For smaller threshold values, it is quite likely that more safe branches will lead to more tree-topology types demanding the consideration of more subtle differences between the corresponding alignments.

We define Impact as the normalized difference between Alignment and Alignment∗.

Amounts of anterior, posterior, and distal resected bone were calculated along with the difference in orientation between the alignment axes.

The third method (conservation difference or CD) is based on the conservation differences between a native alignment and an alignment derived from the Z-score sequence design [ 21].