Sentence examples for differences between alignment from inspiring English sources
Very high correlation of gene-level values comparing Bowtie and IndexDP alignments for the set of AS reads ruled out differences between alignment tools as the source of the observed biases.
Recent reviews have highlighted substantial inconsistencies and differences between alignment results generated by the ever-growing stock of structural alignment programs.
By default BLAT is set to allow such alignment extensions, but MegaBLAST is not, resulting in the type of differences between alignments presented in Figure 3B.
The difference between alignment by choice and forced alignment is who is making the choice.
We define Impact as the normalized difference between Alignment and Alignment∗.
The amount of overextension does not correlate well with the difference between alignment identity and scoring matrix target identity.
The difference between alignments with and without long branch taxa increases confidence in the quality of the smaller data set.
As with the previous dataset, the classical approach based on multiple sequence alignment performed best; this time the difference between alignment-based and alignment-free methods was larger.
The difference between alignments is more striking for perfectly mapping reads (zero mismatch), as 23% more CAST reads (+982,229) align perfectly to CAST but not to NCBIM37.
23Another possibility is to use different alignment algorithms under default values, as did Morrison and Ellis 24 and Kemler et al. 25 The latter approach appears to have several advantages; for instance, one would expect the differences between distinct alignment programs to be higher than those between different parameterisations of the same algorithm.
A dataset of 33 cucumber WRKY genes and 35 assembled WRKY gene cDNAs generated in a previous experimental study [ 30] were aligned to the reassembled cucumber genome by spaln [ 27], followed by manual checking of the differences between the alignment results and gene predictions in annotVer 1.0 and annotVer 2.0.
