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The time course of coherence, partial coherence, and phase difference is extracted by averaging the corresponding TF representation in specific TF regions.
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Height differences were extracted by pixel analysis of several SFM images with different image sizes.
Some lower bounds for the differences were extracted from the proof of the theorem in Appendix C of preprint [17]; they appear to substantially underestimate the actual difference.
The k largest and k smallest differences are extracted.
Next, the coverage and nucleotide differences were extracted using the pileup command of the Maq program.
The dispersion data were fitted numerically as described, where the chemical shift differences were extracted directly from the spectra.
Fox-specific nucleotide differences were extracted from the output file "454HCDiffs.txt" and filtered to create a set of higher confidence differences.
To analyze the sensitivity of ADMIRE, per-probe absolute differences were extracted using bedtools map function and plotted per chromosomal location in Fig. 4g.
In the case of SNP detection, the differences are extracted from local alignments whereas for the detection of structural variations approaches, such as read-pair (RP), read-depth (RD) and split-reads can be used.
Subsequently, the identified brain regions demonstrating significant differences were extracted as regions of interest (ROI), and the mean ReHo values were used for a posthoc analysis after controlling for age and gender effects.
Data on mean differences were extracted as a mean difference between administrations with either the presented instrument score standard deviation (SD), standard error (SE), or a 95%% confidence interval (CI), or as separate mean scores for each administration with their own SD, SE, or 95%% CI.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com