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This separation of events over time may represent a fundamental difference in the evolutionary history of the two types of glands.
This marked difference in the evolutionary conservation/variability of the viral proteins can be attributed to greater demands on the integrity of nonstructural proteins in their viral functional roles, and possibly to the selective advantage of modified structural proteins in the adaptation to host immune responses.
These hypotheses are not mutually exclusive; the correct explanation for the difference in the evolutionary trajectories might involve a mix of these and other processes.
Such an increase in rate for one gene can be detected by calculating phylogenetic branch lengths, with asymmetric branch lengths indicating a difference in the evolutionary rate.
The magnitude of the difference in the evolutionary rates between these time points are 7.5 (6–10) and 2.5 (2–3) times for the RNA and D-loop, respectively (fig. 1 B ).
Differences in the substitution rate between gene sequence clusters indicate a difference in the evolutionary forces that shape protein evolution and are expected for proteins under different functional constraints.
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We propose that these differing ERV-K dynamics reflect underlying differences in the evolutionary ecology of the host species, such that host ecology and demography represent important determinants of ERV-K dynamics.
10.7554/eLife.00961.016 Figure 4. Differences in the evolutionary events generating different C4 sub-types and distantly related taxa.
As with the CC data, the table consistently shows significant P-values, which again may indicate differences in the evolutionary processes at different stages of tumor development.
To determine if there are differences in the evolutionary histories of the different orders across space, the relationship between PD and SR was examined.
We explore the relationship between species richness and phylogenetic diversity for different orders to ask if there are differences in the evolutionary histories of lineages across Asia.
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