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When required, overlapping among the various sets of differentially expressed elements identified in our studies was characterized by means of Venn diagrams generated with the Venny web-based application (http://bioinfogp.cnb.csic.es/tools/venny/index.html) [ 114].
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Figure 2f shows the final diagram generated with default settings by LeView for EPO in the PDB entry 1CSB.
Additional file 3: Figure S 3b shows that samples correctly cluster by experimental condition after removing the modeled date effect using the clustering diagram generated with [ 42].
Application of OOP concepts with class and sequence diagrams generated using unified modified language (UML) design tool has been explained with reference to the software.
For the sake of benchmarking and verifying the accuracy of the present algorithm, the interaction diagrams generated, using the proposed method, are compared with experimental data.
Venn diagrams were generated with Biovenn (Hulsen et al., 2008).
Heatmaps and cluster diagrams were generated with Genesis.
The populations of viable, early apoptotic, late apoptotic, and dead cells in each experiment were analyzed and dot plot diagrams were generated with WinMDI version 2.9 software.
For detection of transcripts that were commonly regulated by either ADAM10 or dnADAM10 overexpression in mono- and double-transgenic mice, Venn diagrams were generated with SAM-based gene lists (Fig. 2).
The kinome tree diagram is generated with Kinome Render.
A patient flow diagram generated in accordance with the CONSORT 2010 statement guidelines is shown in Fig. 1.
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