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Reaction network diagrams generated from the models are also available in several formats.
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Fig. 2 Stability diagram generated from MD simulations of a single Ca + ion at room temperature inside the ion trap.
To address more directly the relationship between Euascomycetes spliceosomal introns and rRNA conservation patterns, we positioned these introns on a conservation diagram generated from 1042 fungal SSU rRNA sequences (see Fig. 3).
The positional variance diagrams generated directly from the EBM (Fig. 1A D) underestimate the uncertainty in the event ordering, as they do not account for uncertainty in the biomarker distribution models.
Diagrams are generated from manually scored video in 5-min bins, over a 25-min time course (n = 6 flies).
Fasta formatted protein sequences were obtained and clustal alignments were generated using the web-based ClustalW server http://www.ch.embnet.org/software/ClustalW.html before the resulting diagrams were generated from the alignments using the Boxshade 3.21 web based server http://www.ch.embnet.org/software/BOX_form.html both of which are based at EMBnet.
SC frequencies were subjected to both a cluster analysis based on the joining tree method implemented within the STATISTICA software package (V6.0, StatSoft) and a PC analysis based on the varimax method implemented within the SAS software package (V8.0, SAS Institute Inc .. Scatter plot diagrams were generated from the coefficients given by the first two PCs.
The Sankey diagram was generated from annotated calls with the rCharts package in R using the d3.js plugin.
A Venn diagram was generated from the contrast of LA-induced changes relative to control for each strain using Rosetta Resolver.
The user can request that predicted fluxes be painted on the Cellular Overview (Latendresse and Karp, 2011), which is an organism-specific metabolic map diagram generated by Pathway Tools from an PGDB.
Since the AW-XWVD produces accurate instantaneous energy and IIB-phase estimates, the constellation diagram generated shows almost no variation from the original points and is better compared to the S-transform.
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