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Figure 4 Fragment diagram layout.
When missing, 2D coordinates are generated on the fly with the new structure diagram layout functionality.
For many complexes more than one ligand structure diagram layout provides an intersection-free arrangement of diagram elements.
The structure diagram layout has been improved and the new code solves a number of long standing issues.
The latter ones are responsible for the need to potentially modify the initial ligand structure diagram layout in order to provide an intersection-free arrangement of interaction lines.
The quality of the complex diagram layout results from the combination of an intersection-free interaction atom order, the convenient geometric positioning of the single structure diagrams (SD), and the consequential arrangement of interaction lines.
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In this case, the layout generation is a semi-automatic process: while the initial diagram layouts are generated automatically, the user has to choose one of them as template and subsequently to align the residue centroids manually by means of certain meta-files.
The problem of automating network-diagram layout has therefore received much attention.
The authors demonstrate the capabilities of the two algorithms by testing them on a variety of network-diagram layout problems.
In this paper the authors propose a restatement of the network-diagram layout problem in which layout-aesthetic concerns are subordinated to perceptual-organization concerns.
Previous research on network-diagram layout has focused on the problem of aesthetically optimal layout, using such criteria as the number of link crossings, the sum of all link lengths, and total diagram area.
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