A more sophisticated approach would be to devise a sequence-profile-like structure to describe the DDI contents of the network query, as well as perhaps constructing such structures for the full network as a one-time expense for many successive queries.
Each has devised a sequence of psalm settings and antiphons parallel to Monteverdi's; Rinaldo Alessandrini using works by Vivaldi such as might have been used for the Vespers service in Italy, and Peter Neumann with works of Heinrich Schutz that might just as probably, if surprisingly, have been brought together in Protestant Germany.
Nonetheless, devising a sequencing strategy on the basis of a previously sequenced member of the same genus is probably justified.
In practice, it would be sensible to rely on the closest available relative in Table S1 when devising a sequencing strategy rather than the median or average for a group.
We devised a sequencing strategy (Additional file 1: Figure S1) to detect footprints generated by transposon remobilization in a set of three T-cell acute lymphoblastic leukemias (T-ALLs) developed in triple-transgenic mice carrying alleles for 1) Cre recombinase expressed from the CD4 promoter, 2) Cre-inducible SB transposase, and 3) a concatemer of T2/Onc2 mutagenic transposons [ 5].
We propose to devise a tailor-made sequence of configurations for the coming traffic pattern.
> > Because of the large genome size (∼1.2 Gb) of C. farreri, it is necessary to devise a cost-effective sequencing plan that can balance the total sequencing cost and genotyping accuracy.
It relies on triangulating the state space, devising a desired sequence of simplices or polytopes that a trajectory needs to pass through to complete a task, and then constructing a separate closed-loop controller on each polytope that enables the system state to move on to the next member of the sequence.
This observation is used in RNAMotifScan (Zhong et al., 2010) to devise a dynamic programming algorithm for sequence structure alignments along the lines of RNAscf (Bafna et al., 2006) or locarna (Will et al., 2007), which in turn are restricted variants of the Sankoff algorithm (Sankoff, 1985).
To address this need, our aim was to devise a robust amplification and Sanger sequencing strategy that could be used for high-throughput production of complete mtGenome haplotypes which meet the highest data quality expectations while accommodating a wide range of DNA quality and quantity.
