Sentence examples similar to developing an alignment from inspiring English sources
Valouev et al. [ 7] have developed an alignment algorithm for both finding overlaps between two optical maps and aligning an optical map to a reference map.
We develop an alignment procedure to assign functional data to atlas regions and correlate activity between regions to generate brain networks.
Abyzov et al. developed an alignment tool called AGE [ 28] to better call long insertions.
Here we develop an alignment prior P(A| τ, T, Λ) that explicitly depends on branch lengths but retains equivalent sequence length distributions on all nodes of the tree.
However, detecting orthologous enhancers using alignment-based methods in higher eukaryotic genomes is particularly challenging, as regulatory regions can undergo considerable sequence changes while maintaining their functionality.We have developed an alignment-free method which identifies conserved enhancers in multiple diverged species.
In this paper, we developed an alignment-free supervised classification approach to classify metagenome samples into predefined classes with sequence signatures from NGS data.
Here, we have developed an alignment-free n-gram based tool, MetaID for determining the taxonomic composition of the microbial community.
Srinivasan et al. [ 14] developed an alignment-free n-gram-based method named MetaID that can accurately identify microorganisms at the strain level and estimate the abundance of each organism in a sample given a metagenomic sequencing dataset.
We plan to extend this work in two directions: First, we wish to develop an alignment-free test for recombination based on the fact that the mean shustring length is highly sensitive to recombination.
We developed an alignment-based method that allows to quantify the similarity of ncRNAs solely based on primary deep sequencing data by considering the position and length-dependent patterns of reads aligned to short intervals on the genome.
Choosing a representation to facilitate computation is critical to developing an efficient alignment mechanism.
