Exact(2)
The second collection, containing 13,325 full-length FBX protein sequences (FBX_Ref, File S2), was then employed to develop transcript models and to predict coding sequences in previously non-annotated genes (we designated a gene non-annotated if it was not present previously in the corresponding proteome database).
Bioinformatic analysis to develop transcript panels.
Similar(58)
To determine whether the two AmphiGli splice variants are differently expressed, we sought to develop transcript-specific probes.
As discussed above, patient 5 developed transcript isoforms when losing molecular response after allogeneic stem cell transplantation.
This led us to develop our Transcript Annotation Pipeline for Alternative Splicing (TAPAS) (Fig. 6) (For details of the algorithm see Methods).
Based on the TS score we develop a Transcript Annotations Pipeline for Alternative Splicing (TAPAS) that identifies functional neighbourhoods of potentially interesting isoforms.
Physical maps have also been developed from transcript mapping [ 9].
Microarrays are most often developed from transcript information in the form of EST (Expressed Sequence Tags) sequences [e.g. [ 1]].
Affymetrix have recently developed 'whole transcript' arrays, which are fundamentally different to their traditional 3′ expression arrays [ 1].
SNEP was originally developed for transcript hybridization; however, it can also be used for SFP detection by whole-genome hybridization after modification of the SNEP script.
Despite the fact that Trinity was specifically developed for transcript assemblies, our quality benchmarks indicated higher quality scores for Oases assemblies.
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