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fasta alignments, removal of short reads and those containing N's, sorting alignments at their 5' and 3' ends, and determining pairwise distances to the HIV-1 infected and seroconverter consensus sequences (scripts available upon request).
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When a significant interaction was found, a post hoc testing was performed to determine pairwise differences.
We collected leaf samples from 290 of A. miyabei individuals in 13 populations and determined pairwise genetic distances among the populations using 12 microsatellite loci.
MEGA 4 was also used to determine pairwise genetic distances.
Multiple comparisons were then carried out to determine pairwise differences between cutthroat, steelhead and hybrid behavior.
Both black murex and rock scallop data were analyzed using a 1-way ANOVA framework and Tukey's HSD multiple comparison test to determine pairwise relationships.
To confirm further that CoAIMs can distinguish among the continental population groups, the 36 MSATs were optimized to be genotyped in three multiplex PCR reactions consisting of 12 markers each (see Materials and Methods).Using this scheme, we genotyped 710 NIGMS and NHGRI population control samples, determined pairwise Fst values (Table 2), and analyzed the data by STRUCTURE and PCA (Figure 4 5).
Best bidirectional blastp hits determined pairwise orthologs.
Initially, we determined pairwise chemical structural similarity between VOCs based on Tanimoto coefficient.
This alignment was used to determine pairwise nucleotide diversity between individuals.
Post-hoc Tukey Kramer was used to adjust for Type I error and determine pairwise differences among least-squared means.
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