We also determined abundance as rpkm using Cufflinks v2.1.1 (with −N, −u, and −b options) (Trapnell et al. 2012) (Supporting Information, Table S1).
Comparing the experimentally determined abundance of individual proteins, highly expressed proteins were found to be consistently smaller than lowly expressed proteins, in accordance with the biosynthetic cost minimization hypothesis.
The number of built and natural spatial entities determines abundances.
has been used to date the terrestrial age of meteorites and to determine abundances of extraterrestrial dust in ice and sediment.
We isolated soluble H2A and H2A.X-F from the egg and chromatin-bound in pronuclei and analyzed them by mass spectrometry analysis to quantitatively determine abundances of S1ph and R3 methylation.
For the frugivorous species, Trogon surrucura, Carpornis cucullatus and Triclaria malachitacea, patch size was the main factor determining abundance.
Here, we examined the factors determining abundance and species composition of Tetragnatha spiders in agricultural ditches around rice paddy fields.
Thus, the primacy of spatial vs. temporal factors in determining abundance, as well as the extent to which spatial patterns change over time, remains uncertain.
In order to quantitatively determine abundance of ribosomal proteins in the high salt treated immature 30S subunits, a TMT-based (tandem mass tags) (Thompson et al., 2003) quantitative mass spectrometry (QMS) was applied, as previously described (Guo et al., 2013).
In particular, the response of woodpeckers to local beetle epidemics depends on how the structural and spatial properties of the surrounding patches influence reproduction, determine abundance and facilitate predator dispersal.
