Sentence examples for determine variant from inspiring English sources

SWAN also uses soft-clip/split read remapping to supplement the likelihood analysis and determine variant boundaries.

Since 2002, genogroup 2 genotype 4 noroviruses have been characterised to determine variant diversity based on by partial sequencing of the gene encoding the virus capsid.[21].[21]

For example, ClinVar, HGMD and OMIM annotations are critical to determine variant pathogenicity.

Second, SNVs called according to the alignment results were compared to the actual generated variants, to determine variant calling performance.

Upon completion of the 1000 Genomes project (http://www.1000genomes.org), incorporation of this information can also be utilized to determine variants not already identified in public databases.

In order to determine variants among three Xiphophorus genomes, we aligned reads of X. couchianus and X. hellerii to the homologous sequences of X. maculatus reference chromosomes.

Details for these SNPs are provided in Additional file 4. Seven genomes had too little coverage of pINV to determine variants.

In addition, using the overlap extension polymerase chain reaction (PCR -based site-directed mutagenesis, we constructed wild-tyPCR -basedozygous mutant plasmids for these variants, which were used as controls to determutagenesists in this study.

The splice site software was accurate to determine variants with impact on splicing, as previously reported [Houdayer et al., 2008], but the splicing outcomes (exon skipping, use of cryptic sites, etc).

The idea is that each contract will be a locally determined variant on a public-private partnership.

Likelihood ratios showed that dialect was a significant factor for determining variant distribution in both contexts [rounded: χ2(3) = 10.82, p = .01; unrounded: χ2(3) = 12.28, p < .01].01]