A plot of the diversity values as a function of position in the genome revealed that determinations of diversity over large genomic regions obscure regions of high diversity embedded in a background of low diversity.
In the determination of species diversity, the Shannon-Wiener diversity index as described by Krebs (1989) was used.
Selecting target genomic regions to serve as proxy for the full-length genome is a popular approach for studies of fungal diversity, as it is in the determination of bacterial diversity in microbiome studies.
Built upon a series of bioinformatic tools, both pipelines allow: the trimming, screening, and alignment of sequences; the assignment of operational taxonomic units (OTUs); phylogenetic analyses; and determination of fungal diversity within and across groups (referred to as α and β diversities) [ 29, 30].
Twenty-two genomic SSR markers were tested in 39 asparagus accessions belonging to ten cultivars and one accession of Asparagus setaceus for determination of genetic diversity.
Furthermore, the novel mesocosm system can be employed for advanced antifouling analysis including metagenomic approaches for determination of microbial diversity attaching to different coatings under changing shear forces.
These findings indicated that the type-specific PCR assays described herein are useful for the determination of genotypic diversity of the B. bovis msa-1 gene in Asia.
Combination of the map information and genotyping data generated from the germplasm analysis allowed the determination of genetic diversity and the extent of LD.
On the other hand, neutral co-dominant nSSR loci are highly polymorphic, which enables the determination of genetic diversity and gene movement of populations.
Yet, the determination of genetic diversity, differentiation, and admixture across the geographical range of such scattered species can be a practical basis for sustainable management and conservation programs.
