Sentence examples for detected chip from inspiring English sources

At 20 h after nuclear transfer, both gene reactivation (qRT-PCR, Figure 2B) and H3.3 incorporation can be detected (ChIP, Figure 2E).

Our analysis suggested that at the same false discovery rate (FDR: expected percentage of false positives in a set of predictions) threshold, xMAN BPMAP can significantly increase the number of detected ChIP-regions compared to Affymetrix BPMAP.

The signal intensities from the two channels (Cy5 and Cy3) were transformed to the form of logarithm ratios (M values), and were then input to MANOR for quality assessment, especially for adjusting potential global gradient and detecting chip regions with low quality [53].

To detect ChIP-seq peaks the MACS14 peak-calling algorithm was applied using default parameters [ 21].

We used MACS (version 2.0.10) with the default parameters to detect ChIP-Seq signal enriched regions.

We recently developed a Model-based Analysis of Tiling arrays (MAT) algorithm [ 14] to reliably detect ChIP-enriched regions on Affymetrix tiling arrays.

H3K4 methylation has been detected by ChIP-chip on promoter regions of Drosophila embryos [11] along with, in cultured cells, regions marked by methylated H3K27 [13], [13] (see also [14]).

For all the cases, the quantitative differences of H3K9me2 enrichments within and among samples detected by ChIP-chip were well validated by qPCR (Additional file 2: Figure S1).

Of the seven highly up-regulated pyrimidine-salvage pathway genes in the toe1 + overexpression data, five were detected with ChIP-chip, indicating that these genes are likely direct target genes of Toe1.

88% of the peaks determined by ChIP-chip are also detected by ChIP-seq (p<10−25; Figure 3D).

A genomic locus (chr7:72384008-72385027) that lacks an ERE and that failed to be detected using ChIP-on-chip (dubbed ERE-neg) also failed to be enriched for ERα using ChIP-PCR when comparing control and E2-treated cells (Figure 5).