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In order to detect the evolutionary potential of two endangered species, Brassica insularis (Brassicaceae) and Centaurea corymbosa (Asteraceae), within and among-population genetic variation for both quantitative traits and allozymic markers was examined.
This is conducted by graphically analysing the types in order to detect the evolutionary characteristics of each period.
To detect the evolutionary relationships of GLRs, a phylogenetic tree was generated from alignments of 13 OsGLRs in rice and 20 AtGLRs in Arabidopsis (Fig. 4 and Additional file 5).
The Ka/Ks ratio for orthologous gene pairs was employed to detect the evolutionary selection pattern of NBS-encoding genes among the three species.
The ratio has been used in many studies to detect the evolutionary forces being imposed on certain set of genes [ 81– 81].
To further detect the evolutionary fate of NBS-LRR duplicates among the five Rosaceae species, site and branch models were implemented using PAML4 (phylogenetic analysis by maximum likelihood) [ 36] (Tables 3 and 4).
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Aimed at detecting the evolutionary origin of MT1, a neighbor-joining tree was constructed on the basis of whole genome and protein sequences.
By analyzing the entire X sequence, our method identified seven evolutionary strata in these ancient regions, where only three could previously be assayed, thus demonstrating the robustness of our method in detecting the evolutionary strata.
Analysis of the structures of Csa5 [ 63], Cse2 [ 64, 65] and Cmr5 [ 66] (PDB codes 2OEB and 4GKF) shows that, although structural homology can be detected, the evolutionary links between the proteins are complex.
Besides detecting the evolutionary events of functional modules, tracking the temporal progression of these functional modules may also provide significant insights into the disease or mechanisms of therapeutic response.
Our proposed approach thus provides an unbiased means to detect the presence of evolutionary strata, and their boundaries, within the framework of statistical hypothesis testing and without gametologous Y sequences.
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