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One way to detect the divergence of epigenetic regulation is a comparative study of transgene silencing in different plant species; however, no study has focused on such an aspect.
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The power of the method to detect the divergence point increases substantially with the number of taxa in each subtree.
The software DIVERGE2 was used to detect the functional divergence among members of SmWRKY subgroups [ 74].
The software DIVERGE2 was used to detect the functional divergence between members of the soybean expansin subfamilies [ 103].
To detect the effect of divergence on functional role, we plotted the distribution of functional classes by the %chSp.
These results demonstrate the method can not only detect the presence of a divergence point in a phylogenetic tree, but also pinpoint the affected branch with high confidence.
Considering the estimated values of α = 0.23 and θ = 0.28, the alignment length L = 6610, and the average branch length (= 0.04) of this data set, simulation results (not shown) suggest that the method just has enough power to detect the presence of a divergence point.
This difference in the detection call stringency may result in the divergence of detected microRNA percentage.
Thus, the gene flow between Neandertals and modern humans that we detect most likely occurred before the divergence of Europeans, East Asians, and Papuans.
We used two statistics, Gmean and DKS, to detect the heterogeneity of polymorphism-to-divergence ratios in the coding regions of CBF2 and - 3. Sliding windows of the polymorphism-to-divergence ratios were also plotted (additional file 5).
Finally, the system for SAEC must include a double-talk detection module which "freezes" the adaptation procedure whenever a near-end signal is detected in order to avoid the divergence of the adaptive algorithm [18, 19].
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