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This initial study revealed high-level commonalities, including (i) selection of documents for curation; (ii) indexing of documents with biologically relevant entities (e.g. genes); and (iii) detailed curation of specific relations (e.g. interactions); however, the detailed workflows also showed many variabilities.
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Open image in new window Fig. 2 Detailed workflow of the methodology.
Fig. 3 The detailed workflow of the authorization phase (The dotted arrows depict the policy creation phase).
The SA service checks the validity of the user with the IDM service and Fig. 2 Detailed workflow of the authentication phase.
(a) The SA service checks the validity of the user with the IDM service and Fig. 2 Detailed workflow of the authentication phase (b) Sends the response back to the user as per the FIPS 196 message.
Fig. 3 The detailed workflow of the authorization phase (The dotted arrows depict the policy creation phase) (b) PEP server passes the SAML ticket to the SA service, which checks the ticket and confirms its validity.
Detailed workflow for microarray data and GSEA is presented in supplementary material Fig. S3.
DOI: http://dx.doi.org/10.7554/eLife.04729.003 10.7554/eLiFigure29.004 Figure 1 figure supplement 1. Detailed workflow for gene expression level estimation.
Figure 1 figure supplement 1 shows detailed workflow for protein microarray analysis.
Small RNA-Seq libraries were analyzed with omiRas (detailed workflow is presented at http://tools.genxpro.net/omiras).genxpro.net/omiras
Detailed workflow of XBSeq and simulation is illustrated in Figure 2. XBSeq requires two inputs, the observed measurement from exonic regions and the background noise from non-exonic regions.
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CEO of Professional Science Editing for Scientists @ prosciediting.com