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The expectations for each individual critique will be detailed in the tutorials.
As detailed in the Web Tutorial (http://www.ibima.med.uni-rostock.de/IBIMA/PluriNetWork/), GO terms such as "transcription" and "embryonic development" are highlighted.
As detailed in the Web Tutorial (http://www.ibima.med.uni-rostock.de/IBIMA/PluriNetWork/), agonists and antagonists of pluripotency are highlighted.
All these examples are detailed in the BioSurfDB Website Tutorial.
Six implemented sampling criteria are detailed in a tutorial and illustrated with graphical examples.
As illustrated in the motivational example above and as detailed in our R tutorial (Additional file 3), samples with low connectivity may represent outliers.
We have included the R code for plotting Fig. 2d to provide a starting point for the selection of k (see more details in the tutorial).
As detailed in our R tutorials, we use two different branch cutting techniques: the constant-height cut method and the dynamic tree cut method [ 19].
The ZFN tracks can be exported back into the "home" GBrowse website for a model organism by clicking on the "share the track" button (details provided in the Tutorial, Figure 3C).
The syntax of the search command is simple and follows the rules outlined below and described in greater detail in the online tutorial.
The CNVineta workflow, outlined in detail in the online tutorial and Figure 1A, allows for in-depth data mining of a given dataset for associated rare as well as common CNVs for a phenotype of interest.
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