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We extracted eight modules (designated module A to module H) from our network, each represented by a group of genes that share similar expression patterns.
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We also report a novel transcription module, designated 'chloroplast biogenesis module' (CBM) in the FKBP16-1 profoter of cereals that also appears to be involved in the regulation of additional genes involved in chloroplast biogenesis or other aspects of plant development.
These were mainly conserved within an 89 bp transcription module, designated as TF module I, which shared a 97% identity between human and tammar.
Each spreadsheet, which can be accessed through the tabs, contains the enriched KEGG pathways belonging to the DESeq2 pairwise results (i.e. 18-PU and PU) or to the designated WGCNA module (i.e. Module I and Module III).
Large gene changes were observed specifically at 18 hap, and 11 enriched KEGG pathways were identified (see KEGGs designated with Module I and 18-P/U in Table 2).
This can be seen as the blocked gene clusters designated as modules of different colors.
Note that we used a combined floating point addition and subtraction unit, in which a single bit was used to designate the module as either a subtract operation or an add operation.
(B ) The Sal target overlaps the RNAP active-center module designated as the 'bridge-helix cap' (i.e., the module comprising the N-terminal half of the bridge helix, the F loop, and the link region; Weinzierl, 2010 ; Hein and Landick, 2010 ).
Module 1 is identical to insulin-like growth factor binding protein, module 2 consists of a chordin-like cysteine-rich domain, module 3 is composed of a thrombospondin type 1 domain and module 4 is designated as the CT module or cysteine knot.
This first module was designated for the study as Module A. For consistency only those residents present for an entire year were included in the analysis.
Based on its module activity, this module could be designated as a tumor repressor module.
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