Furthermore, short-query BLAST against Salinispora prophages was done with spacers from five representative strains from each species that were sorted by Cas-associated, Cas-devoid, associated with known Cas array subtypes (I-E, I-C, I-B), and associated with herein designated Cas array subtypes (I-U).
To experimentally validate transcription of the non-exonic TARs and to describe their transcriptional regulation, we constructed a new array (designated the re-array) using five independent 36-mer probes to represent each of the 44,385 non-TE gene models and 25,313 TARs in the japonica genome (see Materials and Methods).
We designated this array 'upper short'.
We designated this array 'upper-long'.
Here, we used two different universal PBM array designs, designated 'ME' and 'HK', after the initials of their designers (Lam et al., 2011).
The first part takes place on a custom microarray glass slide with designated sub-arrays.
The dots of a given display set were shown as successive brief flashes within a 64×64 LED array, designated as the display board.
In single-copy strains of M. tuberculosis and M. bovis, IS 6110 is always present in the conserved 36-bp array, designated the Direct Repeat region (DR region) [ 12] and, with minor exceptions, all members of the MTBC carry a copy integrated in this locus.
A second TALEN backbone architecture with enhanced nuclease activity was reported that lacks the first 152 aa at the N-terminus of the TALE effector and only has 63 aa after the last repeat in the array (designated N152/C63) (Miller et al. 2011).
HapMap analysis: the Affymetrix Human 500K GeneChip comes as two separate fixed arrays, the Nsp and Sty arrays, designated by the restriction enzyme used in the sample preparation protocol.
