The C&P consequences of Σ can be defined in terms of the sentences that can be inferred in the designated chunk i0 when all appropriate information has been allowed to flow along the permeability relations.
This suggested that these foxtail millet accessions can be grouped into three populations, as inferred from the model, here designated as Pop1 to Pop3, respectively.
In a comparative analysis with a small set of previously experimentally verified PSVs, we found all designated paralogous sequence variants among our computationally inferred mutations.
The tree inferred from 72 plastid protein-coding genes was designated as the "user tree".
Recently, we proposed a new class of RGCs designated RGC_CAMs (after Conserved Amino acids-Multiple substitutions), which are inferred using a genome-scale analysis of protein and underlying nucleotide sequence alignments [ 14].
Recently, we introduced a new class of RGCs designated RGC_CAMs (after conserved amino acids-multiple substitutions), which are inferred from genome-scale analysis of alignments of orthologous proteins and underlying nucleotide sequence alignments (Rogozin et al. 2007a, 2007b).
Furthermore, two loci that we have designated bacterio-opsin associated chaperone (bac) and bacterio-opsin associated protein (bap) are inferred to have important roles in BR biogenesis based on frequent linkage and co-transfer with bacteriorhodopsin genes.
We designate this previously unnamed gene NKX6-3 on the basis of clear orthology to mouse Nkx6-3, infromed from sequence identity and synteny.
We designate this previously unnamed gene NKX2-6 on the basis of clear orthology to mouse Nkx2-6, infromed from sequence identity and synteny, although nomenclature revision for the entire Nk4 gene family should be discussed (see above).
We designate this previously unnamed gene BSX on the basis of clear orthology to the mouse Bsx gene, inferred from sequence identity and synteny.
