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Average background intensities were calculated from designated background and address only beads.
On the other hand, when the threshold is too high, we begin to observe scatter dynamics in the designated background segment since it begins to include fluorescent mitochondria.
A z-score was calculated that adjusted a given sample size to that of the designated background sample (SL), and this standard score procedure was applied to all observation regions for all barcodes.
In this model, one lineage is designated as the "foreground" lineage (along which we estimated positive selection), whereas the other lineages are designated as "background".
All probes for which normalized intensities were lower than the computed threshold were designated as background for each array.
Almost all these are designated as background genes by SynTReN and given the prefix "bgr_".
These LOD scores are based on regressing a quantitative trait on each locus in the genome with some markers designated as background markers and used as covariates in the regression.
Each of the seven terminal branches was set up as foreground separately, whereas all other branches were designated as background at that time.
Therefore, Malus branch in numit rps13, nucp rps13, and mt rps13 were set as foreground lineage and the rest of other rosid species were designated as background lineage.
These models split the branches of the tree into a foreground branch of primary interest, with the rest of the branches designated as background branches.
Users can create regions in ds9 that can be used to designate sources or background.
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