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Protocol Descriptions: free-text descriptions of protocols used in the experiment.
Formalization and control of all stages of the experimental pipeline is now routine, and the need to associate experiments with detailed descriptions of protocols and techniques is now widely accepted [ 1].
Also included are complete descriptions of protocols for total RNA isolation and mRNA amplification, P-MEXP-34397; vRNA depletion, P-MEXP-114798; cRNA labeling, P-MEXP-34400, P-MEXP-35534, P-MEXP-8712; array hybridization and washing of slides, P-MEXP-34401, P-AFFY-6; scanning of slides, P-MEXP-34430; and data normalization, P-MEXP-34431, P-MEXP-120375.
Launched by the United States National Library of Medicine, it contains information about more than 192,862 clinical trials conducted in the US and 189 other countries, including comprehensive descriptions of protocols, conditions, studied drugs, etc. Statuses of some compounds were formed on the basis of information in the literature.
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In Chapter 7, "Folkecology and the Spirit of the Commons," we find an interesting description of protocols and results of this research.
The MAGE-OM provides a number of classes for the description of protocols.
We propose the EXACT ontology as the basis for the description of protocols.
They present a complete description of protocols and groups of subjects.
A detailed description of protocols can be found in the Supplemental Experimental Procedures.
An ontology of EXACT aims to provide a structured vocabulary of concepts for the description of protocols in bio-medical domains.
OBI has not yet been released, but it already has the key classes for the description
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