Sentence examples for derived reads from inspiring English sources

Using the linkage map obtained from the RILs, we realigned the PDRs (parental derived reads) to the 93 11 genome sequence and corrected 62,650 SNP errors (Figure 1).

However, since we produced significantly more large- and small-insert library derived reads for the CS-505 strain from Sanger-based sequencing, a small portion of the observed genome size difference could be due to the better resolution of repeats in this strain.

We used the Burrows-Wheeler Alignment tool (BWA, version 0.6.1) to the whole genome NCBI36/hg18 assembly for the human derived reads and to NCBI37/mm9 assembly for the mouse derived reads, using default settings [ 48].

For sequences from the hybrid and polyploid, PolyCat [ 81] was used to partition A- and D-genome dereads reads.

GS FLX data and Sanger derived reads for strain Eb661 were assembled using the Celera assembler [ 77].

Analysis of un-mapped gDNA derived reads revealed some sequence contamination from mitochondrial and chloroplast DNA, as reported earlier [ 9].

Nonetheless, a greater proportion of plastome-derived reads, as expected, was obtained from the leaf tissue-derived template, presumably due to greater abundance of chloroplasts within leaf cells.

Alignment of chromosome-derived reads with contigs was used to assign contigs to chromosomes and to correct assembly errors.

As expected, many of the IAP-derived reads were ~24-30 ~24-30g with sequente features suggesting they were piRNAs.

Around 8% of the SMRT-derived reads were rejected due to insufficient quality or incomplete read processing during the assembly.

This provided us with a database of IAP-derived reads that were then remapped with less stringent parameters to an IAP consensus sequence.