Sentence examples for derived from the alignment from inspiring English sources

For duplicate genomes such as soybean and maize, a portion of putative SNPs are derived from the alignment of paralogous sequences, i.e. the sequences aligned may come from different loci that are duplicated through evolution in the genome.

Positions of further potential windows could be derived from the alignment of present detections.

Notably, the trees derived from the alignment of other conserved COG genes divided the Bacillus and Corynebacterium genera into the same subgroups produced by the novel bacterial tree.

A PFM is derived from the alignment of known TFBSs of the TF, and it largely reflects the TF's DNA binding preference at each position.

Frequency calculations and scoring schemes were adopted from previous algorithms and the positional weights were derived from the alignment matrix itself.

For HMMSplicer, emissions are strings of match/mismatch values derived from the alignment of the whole read to the genome at the position of each seed match.

Nucleotide sequences of homologous genes in the C57BL/6J mouse and NOD mouse regions were aligned with MAFFT v6.857, and variants were derived from the alignments using an 'ad-hoc' Perl script.

Consensus sequences were derived from the alignments (from which profiles were constructed) and used to identify their corresponding superfamilies, using default parameters.

Using the blocks substitution matrix (BLOSUM62), the substitution scores were derived from the alignments of amino acid sequences that had no more than 62% identity.

To further test this potential relationship, we used a HMM derived from the multiple alignment of the Thg1 proteins in profile-profile searches against two libraries of HMMs with the HHpred program [ 11]: 1) HMMs derived from the alignments in the PFAM database and 2) HMMs derived from searches seeded with representatives of structures in the PDB database.

These outcomes derive from the alignment between the objectives, the methodology and the assessment (Biggs, 2006).