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The median number of SNPs and INDELs found (4615,483), again closely match what was found in the genomic derived calls listed in Table 1.
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This article describes in detail the candidate models submitted by DTU Space and the time-dependent parent model from which they were derived, called CHAOS-5.
Based on this observation, a new metric was empirically derived, called proximity relation, which is a function of Fproximity and the lowest distance d ij ̂ estimated (measured) by the unknown node U i to a reference R j or an already localized node.
Nevertheless, one prediction arising from sexual selection models is that a derived call trait should be associated with a preference for the trait by conspecific females.
Here we describe the remaining two species and find that although males produce the derived call pattern, females use the ancestral recognition mechanism in which no pulse pattern is required.
The absence of a preference for the derived call pattern supports the hypothesis that female choice did not drive the evolution of the double pulse pattern in N. retusus and N. maxillosus.
Melanin production is closely regulated in the body and occurs in specialized ectodermal derived cells called melanocytes.
For both comparisons, the majority of sites that contribute to the loss of sensitivity in the sequencing derived SNP calls are sites that were called heterozygote on the genotyping array.
To test if there were statistically different proportions of each reference/alternate allele combinations between groups we applied the same pairwise.fisher.test when comparing the WGA derived SNP calls to the genomic derived SNP calls (see Methods).
We observed a 98.7% concordance between the SNP calls made using the sequencing data and the SNP array, confirming the validity of the sequencing derived SNP calls.
A similar analysis was performed when comparing the sequencing derived SNP calls to Affymetrix array derived genotypes for genomic and WGA capture experiments.
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