Sentence examples for depth sequencing from inspiring English sources

In rice, the most important crop plant in terms of human consumption, this is exemplified by the development of SNP genotyping platforms (Zhao et al. 2011), low depth sequencing for genome wide association mapping (Huang et al. 2010) and now deeper sequencing of large collections (3K RGP 2014).

Pilot 3 contains high depth sequencing of around 1000 gene regions in which the regions studied here are represented.

Furthermore, the advantage of Illumina to provide 30-times more reads would enable us to perform in depth sequencing of hundreds of samples in one run at a fraction of the costs, making it an excellent tool for large microbiome studies.

We applied ONCOCNV, ADTEx and NextGENe to a high amplicon depth sequencing dataset of eight tumor samples.

Simulations using part of the sequencing data showed that the linkage results are similar for even lower depth sequencing down to ~1 × coverage (Additional file 1, Figure S1A).

It is also possible to detect mutations, such as those underlying Mendelian diseases, in genes or regions of interest through target region capture and high depth sequencing [ 34].

To comparatively analyze the human microRNAomes between normal pregnant and miscarriage deciduas by an in-depth sequencing of microRNA (miRNA); and to specifically examine miRNA-199b-5p miRNA-199b-5p miRNA-199b-5pgulandd kinaserum/glucocorticoidand in vitregulatedeir possible roles in pregnancy maintenance.

Using MIRA coupled with 454 sequencing, we demonstrated a highly efficient capture of methylated DNA followed by in-depth sequencing of a large number of CpG islands.

Contemporary in-depth sequencing of environmental samples has provided novel insights into microbial community structures, revealing that their diversity had been previously underestimated.

This first in-depth sequencing analysis of nifH genes in marine surface waters generated a wealth of new data and novel insights into the diversity and composition of diazotrophic plankton.

In this first in-depth sequencing of nifH PCR amplicons from marine waters, we document a large diversity and spatial variation of putative diazotrophs and a striking dominance by members of the Phylum Proteobacteria.