depth of the assembly

USAGE SUMMARY

The phrase "depth of the assembly" is correct and usable in written English.
It can be used in contexts related to engineering, manufacturing, or any field where the measurement or extent of an assembly is relevant. Example: "The depth of the assembly must be measured accurately to ensure proper fit within the designated space."

✓ Grammatically correct

Science

News & Media

Human-verified examples from authoritative sources

Exact Expressions

1 human-written examples

The average coverage depth of the assembly was 96X.

BMC Genomics

Human-verified similar examples from authoritative sources

Similar Expressions

59 human-written examples

The contigs were then mapped on to the version 2.0 of the bovine assembly (BosTau2.0, The Bovine Genome Sequencing Project Consortium) and the length of the between-contig gaps were estimated (which ranged between 79 to 519 bp, while one gap could not be estimated with the current depth of the genomic assembly).

BMC Genomics

To further assess the extent of transcript coverage provided by unigenes and to evaluate how coverage depth affected the assembly of unigenes, we plotted the ratio of assembled unigene length to A. thaliana ortholog length against coverage depth.

BMC Genomics

In order to assess the extent of transcript coverage provided by unigenes and to evaluate how coverage depth affected the assembly of unigenes, we plotted the ratio of assembled unigene length to P. notoginseng orthologs length against coverage depth (Additional file 2A).

BMC Genomics

To assess the extent of transcript coverage provided by our 454 contigs and to evaluate how coverage depth affected the assembly of full length transcripts, we plotted the ratio of contig length to A. thaliana ortholog (from BLAST) length against coverage depth.

BMC Genomics

To further assess the transcript coverage and to estimate how the coverage depth affected the assembly of the Unigenes, the reciprocal TBLASTX was performed, and the correlation between the ratios of the assembled UniGene lengths to the lengths of Spruce orthologs and coverage depth were surveyed using a scatter plot.

BMC Genomics

The mean depth of the line specific assemblies was found to be in the range 76.3 to 181 (Table  1).

BMC Genomics

Yet, a small number of genes discovered in the cDNA libraries did not generate BLAST hits in the Illumina transcriptome, which could be resolved by increasing the sequencing depth, enhancing the accuracy of the assembly, and perfecting gene annotation strategies.

BMC Genomics

Rivarola et al. [ 16] suggested that examination of the read depths of the resulting assemblies could be used to separate reads of nuclear, chloroplast and mitochondria origin.

BMC Plant Biology

Additionally, the assembly depth of the contigs, calculated contig length (number of clones multiplied by the average insert size of 143 kb) divided by the actual length of the contig, were plotted against the length of contigs (Fig.  1b).

BMC Genomics

Sequencing error levels are low (<1%) and arise primarily from homopolymer runs [7], but tend to be resolved in cases where there is sufficient coverage depth to allow the assembly of overlapping reads [8].

Plosone

Expert writing Tips

Best practice

When describing the "depth of the assembly", ensure you specify the units of measurement (e.g., millimeters, inches) for clarity and precision, especially in technical documentation or scientific reports.

Common error

Avoid using "depth of the assembly" without providing context or specifying which assembly you are referring to. Always clarify the specific assembly and the context in which its depth is relevant.

Linguistic Context

The phrase "depth of the assembly" functions as a noun phrase, specifying a particular dimension or extent of an assembled object or data set. Ludwig AI examples illustrate its use in scientific contexts relating to genomic assemblies.

Expression frequency: Rare

Frequent in

Science

75%

News & Media

12%

Formal & Business

0%

Less common in

Encyclopedias

0%

Wiki

0%

Reference

0%

Ludwig's WRAP-UP

The phrase "depth of the assembly" is a grammatically correct noun phrase primarily used in formal and scientific contexts to describe a specific dimension or extent of an assembly. While Ludwig AI confirms its usability, its frequency is rare. It's crucial to provide clear context and units of measurement when using this phrase to avoid ambiguity. Alternatives like "assembly depth" or "extent of the assembly" can be considered for stylistic variation. The phrase's usage is concentrated in scientific literature, particularly genomics, emphasizing the importance of sequence /s/coverage+depth and assembly quality.

More alternative expressions

Phrases that express similar concepts, ordered by semantic similarity:

assembly depth

Reorders the words for brevity, focusing on the assembly's depth.

extent of the assembly

Replaces "depth" with "extent", emphasizing the overall reach or scope.

completeness of the assembly

Focuses on how finished or comprehensive the assembly is.

size of the assembly

Uses "size" as a general term for the assembly's dimensions.

scale of the assembly

Emphasizes the magnitude or proportions of the assembly.

measurement of the assembly

Highlights the act of measuring the assembly's depth.

dimensions of the assembly

Refers to the specific measurements (length, width, depth) of the assembly.

thickness of the assembly

Specifically addresses the thickness as a measurement of depth.

vertical height of the assembly

Highlights only the vertical dimension.

internal volume of the assembly

Concentrates on what is contained inside rather than external size.

FAQs

How can I measure the "depth of the assembly"?

The method for measuring the "depth of the assembly" depends on the assembly's nature. For physical assemblies, use tools like calipers or depth gauges. For data assemblies, it could refer to sequencing /s/coverage+depth or levels of detail.

What does "depth" refer to in the context of data assembly?

In data assembly, "depth" often signifies the /s/coverage+depth of data points, such as the number of reads covering a specific region in genome sequencing. Higher depth usually indicates more reliable data.

Which is more accurate: "depth of assembly" or "assembly depth"?

"Assembly depth" and "depth of assembly" are both acceptable. "Assembly depth" is more concise but reordering the words slightly shifts emphasis on /s/depth+of+the+assembly, where it has a more descriptive tone.

What is the importance of sequence /s/coverage+depth in genome assembly?

Sequence /s/coverage+depth directly impacts the quality and accuracy of a genome assembly. Higher coverage helps resolve ambiguities and correct errors, leading to more complete and reliable assemblies.