Sentence examples for depth of the alignment from inspiring English sources

The average depth of the alignment before phasing was 6495.3× and the phased haplotype depth was 2097.8×.

In general, it seems reasonable to expect that the level of dependence might vary with the type of organism (viruses, bacteria, and eukaryotes) and the phylogenetic depth of the alignment, for instance.

Furthermore, even if real, SNPs with an observed minor allele count of one are of questionable utility, as population genetics theory predicts their expected population frequency to be much lower than 1/ d, where d is the depth of the alignment [ 70].

This is, however, a minor error-source, since the annotations in general are several times longer than a read length, and since the depth of the alignments always decreases rapidly outside of the annotation.

The estimated copy number shows the average depth of the multiple alignment, the standard deviation of a sampling of the depth and the estimated copy number of the annotated gene.

Such integration of SNP data into ForestTreeDB will facilitate the selection of the most promising SNPs to be incorporated in genetic analyses either based on their reliability (probability score, depth of the EST alignment) or based on the functional annotation of the sequences.

This metric combines both the depth of the sequence alignments with the mean identity of the aligned reads.

These anchors are calculated using a greedy depth-first search of the alignment graph ordered by consistency score, traversing the highest consistency edges first (Fig. 2).

Simulations were performed by randomly placing the observed number of transcript reads within the model and summing the contributions in cumulative read depth of each alignment to the size-adjusted transcript model.

The objectives of the geotechnical characterization are: 1. Identify soil domains in the proposed alignment and their extent in width and depth along the alignment.

This can easily be verified by the variance of the alignment depth or by viewing the distribution of the sampled depth directly.