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Clusters may also be discarded based on user-supplied parameters for minimum voxel count and minimum spine height (depth of base layer).
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The libraries were sequenced with paired-end (2 × 100 bp) runs using Illumina HiSeq 2500 sequencers to a minimal depth of 30× base coverage (average depth of ∼36.9× base coverage).
As the depth of the base from the vertex increases, the area of the "legs" increases, while that of the base is fixed.
The depth of each base in different pools and the ED value of each SNP loci were calculated.
The results demonstrated that the ERT can detect the depth of permafrost base, identify the characteristics of ground ice and the variation of permafrost types in Qumahe.
This study was conducted in the permafrost observation field in Qumahe in the east of the Tibetan Plateau by using electrical resistivity tomography (ERT) for investigating the depth of permafrost base and the structure of permafrost.
%GC content and sequencing depth of each base, were determined from the alignment file utilizing a custom perl scripts.
Radiation was delivered through a single posterior field or parallel opposed fields, depending on the location and depth of lesions base on CT or MRI.
To locate copy-number variation (CNV) candidates using the alignment results, we first obtained the depth of each base along the reference genome using SOAPcoverage (http://soap.genomics.org.cn/).org.cn/
The sequence depth at bases covered by at least one read ranged from 1.38 to 1.81 for the SM samples and 2.07 to 6.72 for the domesticated turkey lines (Table 1). 1 Average sequence depth of each base in the reference genome that is covered by at least 1 read.
The red and blue bars are the estimated depth of tremors based on S-P times, and based on the envelope correlation method, respectively.
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