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Then the number of independent contacts (those contacts in which either atom is outside dmax (>6 Å) of an atom of another contact within the same protein) is computed by ensuring that no more than one contact from any dependent pair of contacts is counted.
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Native contacts are defined by firstly, tabulating all intermolecular donor-acceptor atom contacts shorter than a center-to-center distance dmax (4.5 Å) in the x-ray structure of the protein complex and secondly, by generating a table listing dependent pairs of contacts, i.e. those contacts in which either atom is within dmin (<6 Å) of an atom of another contact within the same protein.
While item response theory models assume that items are independent, the food security module includes several dependent pairs of items.
Motivation: Phylogenetic tree reconciliation is a widely used method for reconstructing the evolutionary histories of gene families and species, hosts and parasites and other dependent pairs of entities.
We develop a novel feature selection method of microarray analysis of dependent paired sample design.
It selects the statistically significant features (e.g. probe sets) focusing on the complete or almost error-less separation of the dependent paired samples when a limited number of samples is available.
Gap gene domains themselves may shift dynamically due to gene interactions, and the expression of dependent pair-rule genes then follows them, as has been documented in the dipteran insect Clogmia albipunctata[ 32].
However, these effects were heavily dependent upon pairing of values and not apparent in means (Figure 5E).
The size of this window is also dependent on the pair of stability criteria.
However, the following example, due to Rubinstein (1989, 1992), shows that simply truncating the common knowledge hierarchy at any finite level can lead agents to behave as if they had no mutual knowledge at all.[32] In Figure 5.1, the payoffs are dependent upon a pair of possible worlds.
Separately considered, the ρ values (ρ ij) indicate the degree of correlation between each pair of dependent variables.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com